Java StepMiner 1.0 (Alpha) (Sept 23, 2006) |
StepMiner is a new method for analyzing time course microarray data that
extracts transitions between two states, up-regulated and down-regulated. For
each gene, StepMiner reports the model that best matches its behavior. The
models are sequences of one or two transitions. The rising or falling direction
and the time of occurrence of each transition is reported.
StepMiner can be downloaded using following links.
The Java source code can be obtained upon request by email
(dsahoo@ucsd.edu or dill@cs.stanford.edu).
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Source Code : [Zip] Download StepMiner 1.0 source code Windows : [Zip] Download StepMiner 1.0 (Alpha) for Java 1.5 [Zip] Download StepMiner 1.0 (Alpha) for Java 1.4 Unix : [tar.gz] Download StepMiner 1.0 (Alpha) for Java 1.5 [tar.gz] Download StepMiner 1.0 (Alpha) for Java 1.4 MAC OS X : [Zip] For MAC OS X Click here for StepMiner tutorial. Click here for StepMiner command line options. Perl code for StepMiner for use in Hegemon: stepminer.pm stepminer.pl LICENSE |