Table of Contents
stepminer-1.0.jarThe StepMiner tool in Java archive format (.jar).
stepminer,stepminer.batScripts to run StepMiner. For unix systems use
stepminerand for Windows systems usestepminer.bat.images/*The StepMiner icons.
doc/*The StepMiner documentations in docbook SGML format.
gene_association.goa_human,gene_association.sgdThese are gene annotations files downloaded from http://www.geneontology.org for human and yeast respectively. The gene annotations are used for the "GO analysis" functionality in StepMiner.
gene_ontology.oboThe gene ontology in OBO format. This is also downloaded from http://www.geneontology.org . The gene ontology is used for the "GO analysis" functionality in StepMiner.
yeast.pclYeast time course data from Brauer, et al.
Matthew J. Brauer, Alok J. Saldanha, Kara Dolinski, and David Botstein Homeostatic Adjustment and Metabolic Remodeling in Glucose-limited Yeast Cultures Mol. Biol. Cell 2005 16: 2503-2517. First Published on March 9 2005; 10.1091/mbc.E04-11-0968 [Abstract] [Full Text] [PDF] [Supplemental Material] serum.pclSerum response time course microarray data.
Gene Expression Signature of Fibroblast Serum Response
Predicts Human Cancer Progression: Similarities between Tumors and
Wounds.
Howard Y. Chang, Julie B. Sneddon, Ash A. Alizadeh,
Ruchira Sood, Rob B. West, Kelli Montgomery,
Jen-Tsan Chi, Matt van de Rijn,
David Botstein, Patrick O. Brown
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Synopsis
hongjuan-10uM.pclTime course microarray data from Zhao et al.
Hongjuan Zhao, Michael L. Whitfield, Tong Xu, David Botstein, and James D. Brooks Diverse Effects of Methylseleninic Acid on the Transcriptional Program of Human Prostate Cancer Cells Mol. Biol. Cell 2004 15: 506-519. First Published on November 14 2003; 10.1091/mbc.E03-07-0501 [Abstract] [Full Text] [PDF]